Tom Stanton

@tomdstanton

Microbial bioinformatics postdoc; mol bio background

Monash University Melbourne

Followers

121

Following

Public Repos

Private Repos

Language Breakdown

Lines of code distribution across 16 owned repositories

951K Total LOC

Python

851,091 lines

89.5%

N/A

Rust

80,290 lines

8.4%

N/A

Makefile

8,979 lines

0.9%

N/A

6,703 lines

0.7%

N/A

Just

2,230 lines

0.2%

N/A

Other

1,986 lines

0.2%

N/A

I-Shaped Developer

I-shaped

Specialist — deep expertise in Python

Python

Rust

Makefile

Just

Collaboration Network

Global Impact visualization

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0 active collaborators

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PRs

Growth

+18%

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Coding Streak

Contribution activity over the past year

2 days

322

Contributions

294

Commits

Pull Requests

Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun

Based on GitHub activity

Less

Followers 34

tonystar

@tonystar

Rachael St. Jacques

@stjacqrm

TON NGOC MINH QUAN

@tnmquann

Martin Larralde

@althonos

YuyingYao

@yaoyuying666

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Following

121 total

Hyunbin Kim

@khb7840

Milot Mirdita

@milot-mirdita

George Ho

@eigenfoo

andrewjpage

@andrewjpage

Savannah Ostrowski

@savannahostrowski

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Synced via GitHub

Top Repositories

sideroscanner

SideroScanner: a tool for annotating IROMPs in bacteria

8 2

Python

pyfgs

🔗🐍⏭️ PyO3 bindings and Python interface to FragGeneScanRs, a gene prediction model for short and error-prone reads

7 0

Python

bart

bacterial read typer :dna: :skateboard: :microbe:

5 2

Python

GetAlleles

Extract alleles from genome assemblies

2 2

Python

EC-K-typing

E. coli K-antigen group 2 and group 3 typing database

1 0

tomdstanton

🦠🧬💻 Bytes and bacteria

1 0

Nunjucks

kaptive-plot

Plotting library for Kaptive, the tool for in silico serotyping

1 0

Python

eris

🧬🍏✨ Graph-aware contextual annotation of targeted genomic features.

1 1

Python

vibrio_parahaemolyticus_genomoserotyping

Kaptive database of O and K antigen clusters of Vibrio parahaemolyticus

0 0

KAC_cps_reference

This repository contains a Kaptive-compatible cps loci database for typing Klebsiella aerogenes complex (KAC) species.

0 0

Open Source Impact

Contributions to external projects

39 merged PRs

klebgenomics/Kaptive

bacpop/ska.rust

104

klebgenomics/KoSC-surface-antigen-loci

klebgenomics/KlebNNSapp

klebgenomics/KpSC_surface_antigen_loci

Contributed to 5 repositories